Bibliography

FCS+21

Antonio De Falco, Francesca Caruso, Xiao-Dong Su, Antonio Iavarone, and Michele Ceccarelli. A fast variational algorithm to detect the clonal copy number substructure of tumors from single-cell data. bioRxiv, November 2021. URL: https://doi.org/10.1101/2021.11.20.469390, doi:10.1101/2021.11.20.469390.

MMR+20

Ashley Maynard, Caroline E. McCoach, Julia K. Rotow, Lincoln Harris, Franziska Haderk, D. Lucas Kerr, Elizabeth A. Yu, Erin L. Schenk, Weilun Tan, Alexander Zee, Michelle Tan, Philippe Gui, Tasha Lea, Wei Wu, Anatoly Urisman, Kirk Jones, Rene Sit, Pallav K. Kolli, Eric Seeley, Yaron Gesthalter, Daniel D. Le, Kevin A. Yamauchi, David M. Naeger, Sourav Bandyopadhyay, Khyati Shah, Lauren Cech, Nicholas J. Thomas, Anshal Gupta, Mayra Gonzalez, Hien Do, Lisa Tan, Bianca Bacaltos, Rafael Gomez-Sjoberg, Matthew Gubens, Thierry Jahan, Johannes R. Kratz, David Jablons, Norma Neff, Robert C. Doebele, Jonathan Weissman, Collin M. Blakely, Spyros Darmanis, and Trever G. Bivona. Therapy-induced evolution of human lung cancer revealed by single-cell RNA sequencing. Cell, 182(5):1232–1251.e22, September 2020. URL: https://doi.org/10.1016/j.cell.2020.07.017, doi:10.1016/j.cell.2020.07.017.

RSY+21

Gao R., Bai S., Henderson YC, Lin Y., Schalck A., Yan Y., Kumar T., Hu M., Sei E., Davis A., Wang F., Shaitelman SF, Wang JR, Chen K., Moulder S., Lai SY, and Navin NE. Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes. Nature Biotechnology, 39:599–608, January 2021. URL: https://doi.org/10.1038/s41587-020-00795-2, doi:10.1038/s41587-020-00795-2.

TVH+16

I. Tirosh, A. S. Venteicher, C. Hebert, L. E. Escalante, A. P. Patel, K. Yizhak, J. M. Fisher, C. Rodman, C. Mount, M. G. Filbin, C. Neftel, N. Desai, J. Nyman, B. Izar, C. C. Luo, J. M. Francis, A. A. Patel, M. L. Onozato, N. Riggi, K. J. Livak, D. Gennert, R. Satija, B. V. Nahed, W. T. Curry, R. L. Martuza, R. Mylvaganam, A. J. Iafrate, M. P. Frosch, T. R. Golub, M. N. Rivera, G. Getz, O. Rozenblatt-Rosen, D. P. Cahill, M. Monje, B. E. Bernstein, D. N. Louis, A. Regev, and M. L. Suvà. Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma. Nature, 539(7628):309–313, 11 2016.

WFH+21

Fengying Wu, Jue Fan, Yayi He, Anwen Xiong, Jia Yu, Yixin Li, Yan Zhang, Wencheng Zhao, Fei Zhou, Wei Li, Jie Zhang, Xiaosheng Zhang, Meng Qiao, Guanghui Gao, Shanhao Chen, Xiaoxia Chen, Xuefei Li, Likun Hou, Chunyan Wu, Chunxia Su, Shengxiang Ren, Margarete Odenthal, Reinhard Buettner, Nan Fang, and Caicun Zhou. Single-cell profiling of tumor heterogeneity and the microenvironment in advanced non-small cell lung cancer. Nature Communications, May 2021. URL: https://doi.org/10.1038/s41467-021-22801-0, doi:10.1038/s41467-021-22801-0.