infercnvpy.tl.tsne

infercnvpy.tl.tsne(adata, use_rep='cnv_pca', key_added='cnv_tsne', inplace=True, **kwargs)

Compute the t-SNE on the result of infercnvpy.tl.infercnv().

Thin wrapper around scanpy.tl.tsne()

Parameters

adata : AnnData

annotated data matrix

use_rep : str (default: 'cnv_pca')

Key under which the result of infercnvpy.tl.pca() is stored in adata

key_added : str (default: 'cnv_tsne')

Key under which the result of t-SNE will be stored in adata.obsm

inplace : bool (default: True)

If True, store the result in adata.obsm, otherwise return the result of t-SNE.

**kwargs

Additional arguments passed to scanpy.tl.tsne().